Description
Practical Course on Next-Generation Sequencing (NGS)
Instructors: Dr. Ana Conesa (DEANN Project) & Dr. Erik Bongcam (EMBnet)
Practical Course Details:
This is a 2 day workshop taking place on April, 22 and 23.
Program NGS Course SolBio Conference Cancun 22nd 23rd April 2016
Students should bring their laptops. The eBiokit device will be used to provide local access to databases and programs.
22nd April. Genome Analysis of NGS data
9:00-10:00 Introduction to Genome Analysis using NGS data. (Erik Bongcam)
10:00-11:00 Practical 1: Basic NGS read data handling and quality control
11:00-11:30 Break
11:30-13:00 Practical 2: Whole genome de-novo assembly
13:00-14:00 Lunch
14:00-15:30 Practical 3: Mapping NGS reads to a reference sequence
15:30-16:00 Break
16:00-17:00 Population Genomics. (Andres Moreno)
17:00-18: Practical 4: Population Structure Analysis of Admixed Genomes
23rd April. Transcriptomics Analysis with NGS Data
9:00-10:00 Introduction to RNAseq data analysis. (Ana Conesa)
10:00-11:00 Practical 5: RNAseq mapping and quantification
11:00-11:30 Break
11:30-13:00 Practical 6: Differential expression analysis and enrichment
13:00-14:00 Lunch
14:00-15:30 Systems Biology and regulatory networks (Claudia Rangel)
15:30-16:00 Break
16:00-18:00 Hand-ons on network analysis
